Bug-Database: https://sourceforge.net/p/subread/bugs/
Bug-Submit: https://support.bioconductor.org/
Changelog: https://subread.sourceforge.net/
Documentation: https://subread.sourceforge.net/SubreadUsersGuide.pdf
Archive: SourceForge
Reference:
- # If you use Rsubread, you can cite:
  Author: Yang Lian and Gordon K. Smyth and Wei Shi
  Title: The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
  Journal: Nucleic Acids Research
  Year: 2019
  Volume: 47
  Number: 8
  Pages: e47-e47
  DOI: 10.1093/nar/gkz114
  PMID: 30783653
  URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/30783653/
- # If you use Subread or Subjunc aligners, you can cite:
  Author: Yang Lian and Gordon K. Smyth and Wei Shi
  Title: |
    The Subread aligner: fast,  accurate and scalable read mapping by seed-and-vote
  Journal: Nucleic Acids Research
  Year: 2013
  Volume: 41
  Number: 10
  Pages: e108–e108
  DOI: 10.1093/nar/gkt214
  PMID: 23558742
  URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23558742/
  Publisher: Oxford University Press (OUP)
  Type: article
- # If you use featureCounts, you can cite:
  Author: Yang Lian and Gordon K. Smyth and Wei Shi
  Title: |
    featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
  Journal: Bioinformatics
  Year: 2014
  Volume: 30
  Number: 7
  Pages: 923–930
  DOI: 10.1093/bioinformatics/btt656
  PMID: 24227677
  URL: https://academic.oup.com/bioinformatics/article/30/7/923/232889?
- # If you use Rsubread inbuilt annotations, you can cite:
  Author: David Chisanga and Yang Liao and Wei Shi}
  Title: Impact of gene annotation choice on the quantification of RNA-seq data
  Journal: BMC Bioinformatics
  Year: 2022
  Volume: 23
  Number: 1
  DOI: 10.1186/s12859-022-04644-8
  PMID:  35354358
  URL: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/35354358/
Registry:
 - Name: OMICtools
   Entry: OMICS_01255
 - Name: SciCrunch
   Entry: SCR_009803
 - Name: bio.tools
   Entry: subread
 - Name: conda:bioconda
   Entry: subread
