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	Cystein Bonding State and Connectivity Predictor
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Usage:

	./predict.sh <protein.psi2> <query.id> 

<protein.psi2> is a file containing the psiblast alignment profile for such chain.

<query.id> is the name of the query, used for naming files and as name of chain in the output 

Predictions Output:

	html formatted prediction to stdout

References:

    Please cite:

    A. Ceroni, A. Passerini, A. Vullo and P. Frasconi. DISULFIND: a Disulfide Bonding State and Cysteine Connectivity Prediction Server, 
	Nucleic Acids Research, 34(Web Server issue):W177--W181, 2006. 

	For the disulphide connectivity predictor see:

	A. Vullo and P. Frasconi. Disulfide Connectivity Prediction using Recursive Neural Networks and Evolutionary Information, 
	Bioinformatics, 20, 653-659, 2004.

	For the cystein bonding state predictor see:

	P. Frasconi, A. Passerini, and A. Vullo. A Two-Stage SVM Architecture for Predicting the Disulfide Bonding State of Cysteines, 
	Proc. IEEE Workshop on Neural Networks for Signal Processing, pp.25-34, 2002.

	A.Ceroni, P.Frasconi, A.Passerini and A.Vullo. Predicting the Disulfide Bonding State of Cysteines with Combinations of Kernel Machines, 
	Journal of VLSI Signal Processing, 35, 287-295, 2003. 
		

