bowtie2 (2.1.0-2) unstable; urgency=low

  * Closes: #713000 
  * d/control: fixed description for bowtie2-examples,
     bumped Standards-Version,
     removed DM-Upload-Allowed,
     use canonical vcs
  * d/tests/: underscore are not allowed for tests

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Tue, 25 Jun 2013 13:58:18 +0200

bowtie2 (2.1.0-1) unstable; urgency=low

  * - d/help2man-wrapper: as kindly suggested by Andreas Tille 
    Closes: #701686
    - d/rules: use help2man-wrapper instead of help2man to generate man pages
  * Imported Upstream version 2.1.0
  * refreshed patches

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Wed, 27 Feb 2013 15:58:40 +0100

bowtie2 (2.0.6-1) unstable; urgency=low

  * Imported Upstream version 2.0.6

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Tue, 19 Feb 2013 17:30:42 +0100

bowtie2 (2.0.5-1) unstable; urgency=low

  * Imported Upstream version 2.0.5

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 11 Jan 2013 11:19:34 +0100

bowtie2 (2.0.4-1) unstable; urgency=low

  * Imported Upstream version 2.0.4

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 27 Dec 2012 17:33:36 +0100

bowtie2 (2.0.2-1) unstable; urgency=low

  [ Carlos Borroto ]
  * Imported Upstream version 2.0.2
  * bowtie2_gcc4.7.patch no longer needed

  [ Alexandre Mestiashvili ]
  * added autopkgtest testsuite
  * updated Uploaders field

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Mon, 19 Nov 2012 16:31:02 +0100

bowtie2 (2.0.0-beta7-1) unstable; urgency=low

  [ Alexandre Mestiashvili ]
  * debian/control force architcures to i386/amd64 kfreebsd-i386/amd64 and 
    hurd-i386 SSE is not availbale on others. Closes: #668123 
  * debhelper version 9
  * debian/rules forced hardening flags
  * hardening.patch to inject hardening CPPFLAGS
  * Imported Upstream version 2.0.0-beta7
  * debian/bowtie2.lintian-overrides to avoid lintian's waring
    to be fixed by using epochs and tilda in upstream version 

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Mon, 30 Jul 2012 13:51:31 +0200

bowtie2 (2.0.0-beta6-3) unstable; urgency=low

  * normalized architecture detection.
    For example kfreebsd-amd64 is detected as an amd64 architecture 
    and msse flag is set.(Previous commit was wrong) (Closes: #673159)

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 01 Jun 2012 21:58:49 +0200

bowtie2 (2.0.0-beta6-2) unstable; urgency=low

  * debian/rules normalized output of dpkg-architecture,  
    so for example kfreebsd-amd64 is detected as an amd64 architecture 
    and sse flags are enabled for it.

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 31 May 2012 19:22:56 +0200

bowtie2 (2.0.0-beta6-1) unstable; urgency=low

  * updated debian/watch and get-orig-source to track -source suffix
  * Imported Upstream version 2.0.0-beta6
  * debian/patches/fix_makefile_machine_detection.patch
    use -msse2 only for Intel architectures, Closes: #672526

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 11 May 2012 08:41:59 +0200

bowtie2 (2.0.0-beta5-2) unstable; urgency=low

  [ Alexandre Mestiashvili ]
  * file sse_util.h has missing copyright header. 
    The Author (Benjamin Langmead) has
    confirmed that the file is distributed under GPL3 license.

  [ Andreas Tille ]
  * debian/upstream: Added publication
  * debian/patches/fix_makefile_machine_detection.patch + debian/rules:
    prevent -mXX and -msse2 switches for non Intel architectures

  [ Alexandre Mestiashvili ]
  * debian/patches/bowtie2_gcc4.7.patch Closes: #672090
  * updated DEP3 headers
  * bumperd Standards-Version to 3.9.3
  * uname -m doesn't detect 32 bit chroot env - updated patcH

 -- Andreas Tille <tille@debian.org>  Thu, 26 Apr 2012 13:59:54 +0200

bowtie2 (2.0.0-beta5-1) unstable; urgency=low

  [ Alexandre Mestiashvili ]
  * Initial release (Closes: #660762)

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Wed, 22 Feb 2012 11:03:03 +0100
