Author: Michael R. Crusoe <crusoe@debian.org>
Description: Find some Debian packaged software under their original names
Forwarded: not-needed

--- a/proteinortho6.pl
+++ b/proteinortho6.pl
@@ -508,6 +508,9 @@ Lechner, M., Findeisz, S., Steiner, L.,
 # =item B<--purity>=float (>0, default: choose value automatically)
 # avoid spurious graph assignments, the lower the purity threshold the more uncertain edges are cut
 
+# Find some Debian packaged software under their original names
+$ENV{PATH} = "$ENV{PATH}:/usr/lib/debian-med/bin";
+
 ##########################################################################################
 # Imports
 ##########################################################################################
--- a/Makefile
+++ b/Makefile
@@ -305,7 +305,7 @@ test_step2: proteinortho6.pl
 	fi
 
 	@echo -n " [3/12] -p=diamond test: "
-	@if [ "$(shell which diamond)" = "" ]; then\
+	@if [ "$(shell which diamond-aligner)" = "" ]; then\
 		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
 	else \
 		./proteinortho6.pl -silent -force -project=test_diamond -p=diamond test/*.faa; \
@@ -314,7 +314,7 @@ test_step2: proteinortho6.pl
 	fi
 	
 	@echo -n " [4/12] -p=diamond (--moresensitive) test (subparaBlast): "
-	@if [ "$(shell which diamond)" = "" ]; then\
+	@if [ "$(shell which diamond-aligner)" = "" ]; then\
 		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
 	else \
 		./proteinortho6.pl -silent -force -project=test_diamondmoresensitive -p=diamond -subparaBlast="--more-sensitive" test/*.faa; \
