Author: Michael R. Crusoe <crusoe@debian.org>
Description: Find some Debian packaged software under their original names
Forwarded: not-needed

--- a/proteinortho6.pl
+++ b/proteinortho6.pl
@@ -612,6 +612,9 @@ if ($tput=~m/[^0-9]|^&/ && $tput <16) {
   $NC="";
 }
 
+# Find some Debian packaged software under their original names
+$ENV{PATH} = "$ENV{PATH}:/usr/lib/debian-med/bin";
+
 ##########################################################################################
 # Parameters
 ##########################################################################################
--- a/Makefile
+++ b/Makefile
@@ -297,7 +297,7 @@ test_step2: proteinortho6.pl
 	fi
 
 	@echo -n " [3/12] -p=diamond test: "
-	@if [ "$(shell which diamond)" = "" ]; then\
+	@if [ "$(shell which diamond-aligner)" = "" ]; then\
 		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
 	else \
 		./proteinortho6.pl -silent -force -project=test_diamond -p=diamond test/*.faa; \
@@ -306,7 +306,7 @@ test_step2: proteinortho6.pl
 	fi
 
 	@echo -n " [4/12] -p=diamond (--moresensitive) test (subparaBlast): "
-	@if [ "$(shell which diamond)" = "" ]; then\
+	@if [ "$(shell which diamond-aligner)" = "" ]; then\
 		echo "$(ORANGE)diamond missing, skipping...$(NC)"; \
 	else \
 		./proteinortho6.pl -silent -force -project=test_diamondmoresensitive -p=diamond -subparaBlast="--more-sensitive" test/*.faa; \
